STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BW31_01493annotation not available (1209 aa)    
Predicted Functional Partners:
BW31_01492
annotation not available
 
 
 0.984
BW31_01490
annotation not available
 
  
 0.965
BW31_01491
annotation not available
 
  
 0.964
BW31_01494
annotation not available
 
  
 0.964
BW31_01495
annotation not available
 
  
 0.960
BW31_01489
annotation not available
 
   
 0.931
BW31_01496
Uncharacterized protein; Overlaps another CDS with the same product name
 
   
 0.920
tssC
EvpB family type VI secretion protein; Overlaps another CDS with the same product name
 
  
 0.920
BW31_01568
Uncharacterized protein; Overlaps another CDS with the same product name
 
 
 0.905
BW31_01508
annotation not available
 
  
 0.866
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pseudomonas herbicola
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