STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcp1annotation not available (160 aa)    
Predicted Functional Partners:
stp_2
annotation not available
 
   
 0.881
tssC
EvpB family type VI secretion protein; Overlaps another CDS with the same product name
 
 
 0.874
BW31_01507
annotation not available
 
  
 0.869
BW31_01506
annotation not available
 
     0.854
BW31_01509
annotation not available
 
   
 0.854
BW31_01508
annotation not available
 
    0.852
BW31_01496
Uncharacterized protein; Overlaps another CDS with the same product name
 
 
 0.851
vgrS
annotation not available
 
   
 0.833
clpV1_2
Belongs to the ClpA/ClpB family.
 
   
 0.827
BW31_01565
annotation not available
 
   
 0.827
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pseudomonas herbicola
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