STRINGSTRING
ycgV protein (Pantoea agglomerans) - STRING interaction network
"ycgV" - annotation not available in Pantoea agglomerans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycgVannotation not available (957 aa)    
Predicted Functional Partners:
BW31_01730
Putative conserved protein (105 aa)
 
          0.802
BW31_01726
annotation not available (2447 aa)
         
  0.742
BW31_04691
annotation not available (6001 aa)
 
     
  0.623
hpmA_1
annotation not available (4150 aa)
 
   
  0.533
BW31_01877
annotation not available (350 aa)
   
 
  0.528
BW31_03315
annotation not available (337 aa)
   
          0.521
BW31_03318
annotation not available (133 aa)
   
          0.509
BW31_00223
annotation not available (110 aa)
   
          0.504
yeeJ
annotation not available (1374 aa)
 
     
  0.499
BW31_03317
annotation not available (331 aa)
   
          0.457
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea agglomerans, Pantoea herbicola, Pseudomonas herbicola
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