STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
relBannotation not available (79 aa)    
Predicted Functional Partners:
relE_1
annotation not available
 
 
 0.999
relE_2
annotation not available
 
 
 0.964
higA_3
annotation not available
  
   
 0.660
higB
annotation not available
  
   
 0.612
yoeB
annotation not available
     
 0.582
BW31_02731
annotation not available
 
   
 0.579
ymdF
annotation not available
 
     0.564
yefM
Antitoxin component of a type II toxin-antitoxin (TA) system.
  
  
 0.536
hipA_3
annotation not available
      
 0.509
BW31_03504
annotation not available
  
 
 0.450
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pseudomonas herbicola
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