STRINGSTRING
ygaC protein (Pantoea agglomerans) - STRING interaction network
"ygaC" - annotation not available in Pantoea agglomerans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygaCannotation not available (111 aa)    
Predicted Functional Partners:
BW31_02064
annotation not available (80 aa)
   
          0.770
ymdD
Glucans biosynthesis protein C; Necessary for the succinyl substitution of periplasmic glucans. Could catalyze the transfer of succinyl residues from the cytoplasmic side of the membrane to the nascent glucan backbones on the periplasmic side of the membrane (377 aa)
   
          0.767
BW31_03701
annotation not available (78 aa)
   
          0.756
BW31_00959
annotation not available (691 aa)
   
          0.739
BW31_02063
annotation not available (133 aa)
   
          0.716
BW31_03845
annotation not available (82 aa)
   
          0.715
BW31_01585
annotation not available (477 aa)
   
          0.711
BW31_04091
annotation not available (88 aa)
   
          0.705
BW31_01612
annotation not available (253 aa)
   
          0.683
BW31_04117
annotation not available (108 aa)
   
          0.671
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea agglomerans, Pantoea herbicola, Pseudomonas herbicola
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