STRINGSTRING
ugpC_3 protein (Pantoea agglomerans) - STRING interaction network
"ugpC_3" - annotation not available in Pantoea agglomerans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpC_3annotation not available (327 aa)    
Predicted Functional Partners:
BW31_04499
annotation not available (271 aa)
  0.992
BW31_04498
annotation not available (291 aa)
   
    0.991
BW31_04497
annotation not available (340 aa)
 
  0.984
cpdA_5
annotation not available (276 aa)
          0.907
BW31_04496
annotation not available (341 aa)
              0.888
BW31_03551
annotation not available (261 aa)
  0.862
BW31_03552
annotation not available (330 aa)
   
   
 
0.822
BW31_03550
annotation not available (281 aa)
   
 
    0.811
BW31_03548
annotation not available (353 aa)
   
 
  0.807
BW31_03463
annotation not available (271 aa)
 
  0.539
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea agglomerans, Pantoea herbicola, Pseudomonas herbicola
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