FSPOR_733 protein (Fusarium sporotrichioides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSPOR_733

DNA helicase. (86 aa)

Predicted Functional Partners:

FSPOR_4907

0.694

FSPOR_4182

0.672

FSPOR_11592

0.533

FSPOR_5963

0.532

FSPOR_9583

0.515

FSPOR_7262

0.482

FSPOR_2779

0.482

FSPOR_2429

0.478

FSPOR_11540

0.473

FSPOR_7449

0.473

Your Current Organism:

Fusarium sporotrichioides

NCBI taxonomy Id: 5514
Other names: F. sporotrichioides, Fusarium sporotrichiella var. sporotrichioides

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSPOR_11540	FSPOR_2429	A0A395RG94	A0A395SKT1	Rrna-processing protein efg-1.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.436
FSPOR_11540	FSPOR_733	A0A395RG94	A0A395ST54	Rrna-processing protein efg-1.	DNA helicase.	0.473
FSPOR_11540	FSPOR_7449	A0A395RG94	A0A395RZ28	Rrna-processing protein efg-1.	Rrna-processing ebp2.	0.574
FSPOR_11540	FSPOR_9583	A0A395RG94	A0A395RPF9	Rrna-processing protein efg-1.	Protein MAK16; Belongs to the MAK16 family.	0.539
FSPOR_11592	FSPOR_2429	A0A395RG21	A0A395SKT1	Putative ski2-antiviral protein and putative helicase.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.646
FSPOR_11592	FSPOR_4182	A0A395RG21	A0A395SCY2	Putative ski2-antiviral protein and putative helicase.	DNA polymerase sigma subunit.	0.721
FSPOR_11592	FSPOR_5963	A0A395RG21	A0A395S4V9	Putative ski2-antiviral protein and putative helicase.	Elongation factor 3.	0.407
FSPOR_11592	FSPOR_733	A0A395RG21	A0A395ST54	Putative ski2-antiviral protein and putative helicase.	DNA helicase.	0.533
FSPOR_2429	FSPOR_11540	A0A395SKT1	A0A395RG94	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Rrna-processing protein efg-1.	0.436
FSPOR_2429	FSPOR_11592	A0A395SKT1	A0A395RG21	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Putative ski2-antiviral protein and putative helicase.	0.646
FSPOR_2429	FSPOR_2779	A0A395SKT1	A0A395SJK7	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Dead deah box helicase.	0.646
FSPOR_2429	FSPOR_4907	A0A395SKT1	A0A395SA40	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	ATP-dependent rna helicase dob1.	0.971
FSPOR_2429	FSPOR_5963	A0A395SKT1	A0A395S4V9	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Elongation factor 3.	0.864
FSPOR_2429	FSPOR_7262	A0A395SKT1	A0A395RZ83	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Importin N-terminal domain-containing protein.	0.730
FSPOR_2429	FSPOR_733	A0A395SKT1	A0A395ST54	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	DNA helicase.	0.478
FSPOR_2429	FSPOR_7449	A0A395SKT1	A0A395RZ28	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Rrna-processing ebp2.	0.989
FSPOR_2429	FSPOR_9583	A0A395SKT1	A0A395RPF9	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Protein MAK16; Belongs to the MAK16 family.	0.989
FSPOR_2779	FSPOR_2429	A0A395SJK7	A0A395SKT1	Dead deah box helicase.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.646
FSPOR_2779	FSPOR_4182	A0A395SJK7	A0A395SCY2	Dead deah box helicase.	DNA polymerase sigma subunit.	0.610
FSPOR_2779	FSPOR_5963	A0A395SJK7	A0A395S4V9	Dead deah box helicase.	Elongation factor 3.	0.407