STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA14928.1Hypothetical protein. (121 aa)    
Predicted Functional Partners:
SEA14910.1
Protein of unknown function.
       0.716
SEA14947.1
Hypothetical protein.
       0.675
SEA14894.1
Hypothetical protein.
       0.460
SDZ76800.1
Transcriptional regulator, contains XRE-family HTH domain.
    
 
 0.435
SDZ89182.1
Helix-turn-helix.
    
 
 0.435
SEA02120.1
Hypothetical protein.
    
 
 0.435
SEA23218.1
Helix-turn-helix domain-containing protein.
    
 
 0.435
SEA28158.1
Helix-turn-helix.
    
 
 0.435
SEA35681.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
    
 
 0.435
SEA67445.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
    
 
 0.435
Your Current Organism:
Arachidicoccus rhizosphaerae
NCBI taxonomy Id: 551991
Other names: A. rhizosphaerae, Arachidicoccus rhizosphaerae Madhaiyan et al. 2015, Flavisolibacter sp. Vu-144, Flavisolibacter sp. Vu-35, Flavisolibacter sp. Vu-7, KCTC 22378, NCIMB 14473, strain Vu-144
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.