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lspA protein (Dehalogenimonas lykanthroporepellens) - STRING interaction network
"lspA" - Lipoprotein signal peptidase in Dehalogenimonas lykanthroporepellens
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
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lspALipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family (150 aa)    
Predicted Functional Partners:
Dehly_0106
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil (301 aa)
   
   
  0.901
Dehly_0108
PFAM- zinc finger DksA/TraR C4-type; KEGG- deg-DehalGT_1091 transcriptional regulator, TraR/DksA family (123 aa)
   
        0.881
Dehly_0516
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (362 aa)
         
  0.721
gltX
Glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction- glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily (488 aa)
 
          0.651
Dehly_0105
PFAM- RDD domain containing protein; KEGG- deg-DehalGT_1082 RDD domain containing protein (171 aa)
              0.648
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family (410 aa)
   
   
  0.633
Dehly_0876
PFAM- Immunoglobulin I-set domain protein; FG-GAP repeat protein; KEGG- psl-Psta_4082 outer membrane adhesin like proteiin (1414 aa)
         
  0.607
lgt
Prolipoprotein diacylglyceryl transferase; Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins (260 aa)
   
   
  0.572
secF
Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (300 aa)
   
   
  0.570
Dehly_0103
KEGG- rci-RCIX573 hypothetical protein (196 aa)
              0.570
Your Current Organism:
Dehalogenimonas lykanthroporepellens
NCBI taxonomy Id: 552811
Other names: Chloroflexi bacterium BL-DC-8, Chloroflexi bacterium BL-DC-9, D. lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens, Dehalogenimonas lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens str. BL-DC-9, Dehalogenimonas lykanthroporepellens strain BL-DC-9
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