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Dehly_0108 protein (Dehalogenimonas lykanthroporepellens) - STRING interaction network
"Dehly_0108" - PFAM: zinc finger DksA/TraR C4-type in Dehalogenimonas lykanthroporepellens
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dehly_0108PFAM- zinc finger DksA/TraR C4-type; KEGG- deg-DehalGT_1091 transcriptional regulator, TraR/DksA family (123 aa)    
Predicted Functional Partners:
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family (150 aa)
   
        0.881
Dehly_0106
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil (301 aa)
         
  0.879
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1296 aa)
       
 
  0.839
gltX
Glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction- glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily (488 aa)
 
     
  0.773
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (333 aa)
       
 
  0.765
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1252 aa)
       
 
  0.722
Dehly_0105
PFAM- RDD domain containing protein; KEGG- deg-DehalGT_1082 RDD domain containing protein (171 aa)
              0.647
Dehly_0103
KEGG- rci-RCIX573 hypothetical protein (196 aa)
              0.570
Dehly_0102
KEGG- dev-DhcVS_1148 hypothetical protein (87 aa)
              0.570
Dehly_0101
KEGG- deb-DehaBAV1_1179 radical SAM domain-containing protein (335 aa)
              0.570
Your Current Organism:
Dehalogenimonas lykanthroporepellens
NCBI taxonomy Id: 552811
Other names: Chloroflexi bacterium BL-DC-8, Chloroflexi bacterium BL-DC-9, D. lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens, Dehalogenimonas lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens str. BL-DC-9, Dehalogenimonas lykanthroporepellens strain BL-DC-9
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