STRINGSTRING
Dehly_0210 protein (Dehalogenimonas lykanthroporepellens) - STRING interaction network
"Dehly_0210" - RNA-metabolising metallo-beta-lactamase in Dehalogenimonas lykanthroporepellens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dehly_0210RNA-metabolising metallo-beta-lactamase (532 aa)    
Predicted Functional Partners:
Dehly_0211
Phage SPO1 DNA polymerase-like protein (214 aa)
              0.765
Dehly_0209
Oligopeptide ABC transporter inner membrane subunit OppC (63 aa)
              0.728
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (306 aa)
 
        0.694
Dehly_0774
Pseudouridine synthase (266 aa)
   
        0.570
Dehly_0196
Membrane-associated zinc metalloprotease (348 aa)
 
        0.548
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (733 aa)
   
   
  0.532
secA
Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane (1072 aa)
 
        0.516
Dehly_0150
Cell division protein FtsK (817 aa)
 
        0.491
Dehly_1368
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5’-end of pre-16S rRNA (143 aa)
 
          0.488
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome (87 aa)
         
  0.486
Your Current Organism:
Dehalogenimonas lykanthroporepellens
NCBI taxonomy Id: 552811
Other names: Chloroflexi bacterium BL-DC-8, Chloroflexi bacterium BL-DC-9, D. lykanthroporepellens, D. lykanthroporepellens BL-DC-9, Dehalogenimonas, Dehalogenimonas lykanthroporepellens, Dehalogenimonas lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens str. BL-DC-9, Dehalogenimonas lykanthroporepellens strain BL-DC-9
Server load: low (4%) [HD]