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rnhB protein (Dehalogenimonas lykanthroporepellens) - STRING interaction network
"rnhB" - Ribonuclease H in Dehalogenimonas lykanthroporepellens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnhBRibonuclease H; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (212 aa)    
Predicted Functional Partners:
Dehly_0765
Hypothetical protein (118 aa)
 
      0.976
Dehly_0095
DNA polymerase I (915 aa)
 
 
  0.866
Dehly_1187
DNA polymerase III subunit beta (419 aa)
     
 
  0.793
Dehly_0949
DNA polymerase III subunit beta; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (376 aa)
     
 
  0.793
Dehly_0677
Thymidylate synthase (215 aa)
   
   
  0.777
Dehly_0737
Hypothetical protein (180 aa)
 
            0.771
pheT
phenylalanyl-tRNA synthetase subunit beta (812 aa)
   
   
  0.748
Dehly_0763
NAD+ synthetase (541 aa)
              0.704
Dehly_0767
Translin (215 aa)
   
        0.650
Dehly_0762
Hypothetical protein (49 aa)
              0.647
Your Current Organism:
Dehalogenimonas lykanthroporepellens
NCBI taxonomy Id: 552811
Other names: Chloroflexi bacterium BL-DC-8, Chloroflexi bacterium BL-DC-9, D. lykanthroporepellens, D. lykanthroporepellens BL-DC-9, Dehalogenimonas, Dehalogenimonas lykanthroporepellens, Dehalogenimonas lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens str. BL-DC-9, Dehalogenimonas lykanthroporepellens strain BL-DC-9
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