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rplT protein (Dehalogenimonas lykanthroporepellens) - STRING interaction network
"rplT" - 50S ribosomal protein L20 in Dehalogenimonas lykanthroporepellens
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
Coexpression
Experiments
Databases
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[Homology]
Score
rplT50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (115 aa)    
Predicted Functional Partners:
rpmI
KEGG- ttr-Tter_0767 ribosomal protein L35; TIGRFAM- ribosomal protein L35; PFAM- ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family (66 aa)
   
 
  0.999
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (113 aa)
 
 
  0.997
rpsP
Manually curated; TIGRFAM- ribosomal protein S16; KEGG- deg-DehalGT_0505 ribosomal protein S16; PFAM- ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family (80 aa)
 
 
  0.995
rpmA
KEGG- deg-DehalGT_1062 ribosomal protein L27; TIGRFAM- ribosomal protein L27; PFAM- ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family (84 aa)
     
 
  0.995
rplA
50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (237 aa)
   
 
  0.995
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (142 aa)
 
 
  0.995
rpsI
PFAM- ribosomal protein S9; KEGG- dev-DhcVS_448 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (131 aa)
 
 
  0.994
rplL
50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation (125 aa)
   
 
  0.994
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (106 aa)
   
 
  0.993
rpmF
KEGG- det-DET1275 50S ribosomal protein L32; TIGRFAM- ribosomal protein L32; PFAM- ribosomal L32p protein; Belongs to the bacterial ribosomal protein bL32 family (73 aa)
   
 
  0.992
Your Current Organism:
Dehalogenimonas lykanthroporepellens
NCBI taxonomy Id: 552811
Other names: Chloroflexi bacterium BL-DC-8, Chloroflexi bacterium BL-DC-9, D. lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens, Dehalogenimonas lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens str. BL-DC-9, Dehalogenimonas lykanthroporepellens strain BL-DC-9
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