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STRINGSTRING
htpX protein (Dehalogenimonas lykanthroporepellens) - STRING interaction network
"htpX" - Protease HtpX homolog in Dehalogenimonas lykanthroporepellens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
htpXProtease HtpX homolog; PFAM- peptidase M48 Ste24p; KEGG- deg-DehalGT_1382 peptidase M48 Ste24p; Belongs to the peptidase M48B family (402 aa)    
Predicted Functional Partners:
Dehly_1169
PFAM- protein of unknown function DUF955; KEGG- rru-Rru_A0537 hypothetical protein (406 aa)
              0.826
Dehly_1168
KEGG- cms-CMS_2134 hypothetical protein (169 aa)
              0.826
Dehly_1171
PFAM- LemA family protein; KEGG- dev-DhcVS_1470 LemA (188 aa)
 
          0.704
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (915 aa)
         
  0.608
Dehly_1172
Uncharacterized protein; Manually curated; KEGG- det-DET1585 hypothetical protein (139 aa)
              0.552
Dehly_1167
KEGG- gme-Gmet_2573 ATP-dependent RNA helicase RhlE; PFAM- DEAD/DEAH box helicase domain protein; helicase domain protein; SMART- DEAD-like helicase ; helicase domain protein; Belongs to the DEAD box helicase family (429 aa)
              0.474
Dehly_1173
PFAM- Colicin V production protein; KEGG- dev-DhcVS_180 integral membrane colicin V production protein (165 aa)
   
        0.419
Your Current Organism:
Dehalogenimonas lykanthroporepellens
NCBI taxonomy Id: 552811
Other names: Chloroflexi bacterium BL-DC-8, Chloroflexi bacterium BL-DC-9, D. lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens, Dehalogenimonas lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens str. BL-DC-9, Dehalogenimonas lykanthroporepellens strain BL-DC-9
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