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Dehly_1517 protein (Dehalogenimonas lykanthroporepellens) - STRING interaction network
"Dehly_1517" - PFAM: Beta propeller domain in Dehalogenimonas lykanthroporepellens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dehly_1517PFAM- Beta propeller domain; KEGG- rci-RCIX2726 hypothetical protein (650 aa)    
Predicted Functional Partners:
Dehly_1516
Manually curated; PFAM- regulatory protein LuxR; KEGG- gym-GYMC10_4775 ATP-dependent transcriptional regulator, MalT-like, LuxR family; SMART- regulatory protein LuxR (904 aa)
 
          0.531
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (915 aa)
     
 
  0.486
Dehly_0983
KEGG- det-DET0967 DEAD-box ATP dependent DNA helicase; PFAM- DEAD/DEAH box helicase domain protein; helicase domain protein; Protein of unknown function DUF1998; SMART- DEAD-like helicase ; helicase domain protein (772 aa)
     
 
  0.466
Dehly_1677
PFAM- transcription elongation factor GreA/GreB domain protein; KEGG- cli-Clim_0577 superfamily I DNA and RNA helicase subunits-like protein (1597 aa)
   
 
  0.445
topA
DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (698 aa)
   
 
  0.423
Dehly_0525
KEGG- det-DET1448 hypothetical protein (44 aa)
   
 
  0.423
Dehly_0318
TIGRFAM- ATP-dependent DNA helicase, RecQ family; PFAM- DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG- pph-Ppha_1436 DEAD/DEAH box helicase domain protein; SMART- DEAD-like helicase ; helicase domain protein (690 aa)
     
 
  0.419
Dehly_1518
KEGG- bxe-Bxe_B0307 putative cytochrome c; manually curated; PFAM- cytochrome c class I (149 aa)
              0.408
Your Current Organism:
Dehalogenimonas lykanthroporepellens
NCBI taxonomy Id: 552811
Other names: Chloroflexi bacterium BL-DC-8, Chloroflexi bacterium BL-DC-9, D. lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens, Dehalogenimonas lykanthroporepellens BL-DC-9, Dehalogenimonas lykanthroporepellens str. BL-DC-9, Dehalogenimonas lykanthroporepellens strain BL-DC-9
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