STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK96488.1Protein TraX; Identified by match to protein family HMM PF05857. (213 aa)    
Predicted Functional Partners:
ADK95822.1
Hypothetical protein.
 
     0.885
ADK95938.1
Hypothetical protein.
 
     0.879
ADK95585.1
Hypothetical protein.
 
     0.660
traM
Conjugative transposon TraM protein; Identified by match to protein family HMM TIGR03779.
 
     0.621
ADK96212.1
Relaxase/mobilization nuclease domain protein; Identified by match to protein family HMM PF03432.
  
     0.561
ADK96461.1
Hypothetical protein.
       0.529
ADK96277.1
Hypothetical protein.
  
     0.513
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
     0.489
traK
Conjugative transposon TraK protein; Identified by match to protein family HMM TIGR03781.
 
     0.424
Your Current Organism:
Prevotella melaninogenica
NCBI taxonomy Id: 553174
Other names: P. melaninogenica ATCC 25845, Prevotella melaninogenica ATCC 25845, Prevotella melaninogenica CCUG 4944 B, Prevotella melaninogenica CIP 105346, Prevotella melaninogenica JCM 6325, Prevotella melaninogenica str. ATCC 25845, Prevotella melaninogenica strain ATCC 25845
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.