STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB64884.1Histone deacetylase family; Identified by match to protein family HMM PF00850. (300 aa)    
Predicted Functional Partners:
EEB64615.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00183; match to protein family HMM PF02518.
   
 0.796
EEB65963.1
Hypothetical protein; Identified by glimmer; putative.
   
 0.745
udk
Uridine kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00235.
   
  0.694
EEB64914.1
Hypothetical protein; Identified by glimmer; putative.
       0.682
EEB65179.1
SNF2 family N-terminal domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851.
   
 0.672
EEB66441.1
Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF01807; match to protein family HMM PF02384; match to protein family HMM PF04851.
   
 0.672
cobB
Transcriptional regulator, Sir2 family; Identified by match to protein family HMM PF02146; Belongs to the sirtuin family. Class III subfamily.
    
 
 0.662
EEB65509.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; Identified by match to protein family HMM PF00160; match to protein family HMM PF00254.
   
 0.568
EEB66559.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; Identified by match to protein family HMM PF00160; match to protein family HMM PF00254.
   
 0.568
guaB_2
CBS domain protein; Identified by match to protein family HMM PF00571.
  
    0.549
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.