STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB64768.1ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (266 aa)    
Predicted Functional Partners:
EEB64776.1
Putative ABC transporter; Identified by match to protein family HMM PF01061.
  
 0.995
EEB64751.1
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
  
 0.995
gldF
Gliding motility-associated ABC transporter permease protein GldF; Identified by match to protein family HMM TIGR03518.
  
 
 0.836
EEB64770.1
Hypothetical protein.
 
  
 0.794
EEB64829.1
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
  
 0.791
EEB64759.1
Hypothetical protein.
 
   
 0.762
EEB64845.1
Hypothetical protein.
 
  
 0.703
EEB66951.1
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
 
  
 0.637
EEB64785.1
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
   
 0.610
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.538
Your Current Organism:
Capnocytophaga sputigena
NCBI taxonomy Id: 553177
Other names: C. sputigena ATCC 33612, Capnocytophaga sputigena ATCC 33612, Capnocytophaga sputigena Capno, Capnocytophaga sputigena str. ATCC 33612, Capnocytophaga sputigena strain ATCC 33612
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.