STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7463_g11544C2H2-type domain-containing protein. (700 aa)    
Predicted Functional Partners:
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.940
B7463_g2964
Uncharacterized protein.
   
 0.937
LSM5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
   
 0.936
B7463_g12140
Uncharacterized protein.
   
 0.934
B7463_g11848
Sm domain-containing protein.
   
 0.934
B7463_g12115
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 0.931
B7463_g5304
PAT1 domain-containing protein.
    
 0.931
B7463_g6311
Sm domain-containing protein.
   
 
 0.856
B7463_g1079
Uncharacterized protein.
    
 0.836
B7463_g12026
Uncharacterized protein.
    
 0.747
Your Current Organism:
Scytalidium lignicola
NCBI taxonomy Id: 5539
Other names: CBS 233.57, IMI 062532, MUCL 4172, S. lignicola, UAMH 385
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.