STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7463_g10470Uncharacterized protein. (621 aa)    
Predicted Functional Partners:
B7463_g11309
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.991
B7463_g396
Matrin-type domain-containing protein.
   
 0.978
B7463_g11957
Uncharacterized protein.
   
 0.977
B7463_g333
Uncharacterized protein.
   
 0.964
B7463_g5610
Matrin-type domain-containing protein.
   
 0.958
B7463_g2873
GH16 domain-containing protein.
   
 
 0.940
B7463_g299
Uncharacterized protein.
    
 
 0.922
B7463_g12082
SF3b1 domain-containing protein.
   
 0.906
B7463_g6855
Uncharacterized protein.
   
 
 0.899
B7463_g3307
Isochorismatase domain-containing protein.
   
 
 0.899
Your Current Organism:
Scytalidium lignicola
NCBI taxonomy Id: 5539
Other names: CBS 233.57, IMI 062532, MUCL 4172, S. lignicola, UAMH 385
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.