STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7463_g7225Helicase ATP-binding domain-containing protein. (862 aa)    
Predicted Functional Partners:
B7463_g1723
3'-5' exonuclease domain-containing protein.
  
 0.981
B7463_g3251
PHD domain-containing protein.
    
 0.973
B7463_g2860
Uncharacterized protein.
   
 0.967
B7463_g3692
Uncharacterized protein.
    
 0.964
B7463_g2688
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.963
B7463_g12250
Uncharacterized protein.
    
 0.962
B7463_g5443
Uncharacterized protein.
    
 0.961
B7463_g9671
HTH TFE/IIEalpha-type domain-containing protein.
   
 0.958
B7463_g3328
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.958
B7463_g7501
TFIIE beta domain-containing protein.
    
 0.953
Your Current Organism:
Scytalidium lignicola
NCBI taxonomy Id: 5539
Other names: CBS 233.57, IMI 062532, MUCL 4172, S. lignicola, UAMH 385
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