STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7463_g64WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (299 aa)    
Predicted Functional Partners:
B7463_g6333
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.999
B7463_g11421
Peptidase S59 domain-containing protein.
    
 0.998
B7463_g6664
Uncharacterized protein.
    
 0.998
B7463_g6617
Uncharacterized protein; Belongs to the WD repeat SEC13 family.
    
 0.998
B7463_g2126
WD_REPEATS_REGION domain-containing protein.
    
 0.998
B7463_g10476
Uncharacterized protein.
    
 0.996
B7463_g3602
WD_REPEATS_REGION domain-containing protein.
    
 0.996
B7463_g3731
WD_REPEATS_REGION domain-containing protein.
    
 0.996
B7463_g9636
Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.
    
 0.993
B7463_g12740
Uncharacterized protein.
   
 0.991
Your Current Organism:
Scytalidium lignicola
NCBI taxonomy Id: 5539
Other names: CBS 233.57, IMI 062532, MUCL 4172, S. lignicola, UAMH 385
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