MPER_04468 protein (Moniliophthora perniciosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MPER_04468

Uncharacterized protein. (272 aa)

Predicted Functional Partners:

MPER_11392

0.653

MPER_04657

0.652

MPER_11391

0.651

MPER_15986

0.558

Your Current Organism:

Moniliophthora perniciosa

NCBI taxonomy Id: 554373
Other names: M. perniciosa FA553, Moniliophthora perniciosa FA553

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPER_04468	MPER_04657	E2LDU5	E2LEB3	Uncharacterized protein.	PNTB domain-containing protein.	0.652
MPER_04468	MPER_11391	E2LDU5	E2LVZ2	Uncharacterized protein.	AlaDh_PNT_C domain-containing protein.	0.651
MPER_04468	MPER_11392	E2LDU5	E2LVZ3	Uncharacterized protein.	Uncharacterized protein.	0.653
MPER_04468	MPER_15986	E2LDU5	E2M602	Uncharacterized protein.	Uncharacterized protein.	0.558
MPER_04657	MPER_04468	E2LEB3	E2LDU5	PNTB domain-containing protein.	Uncharacterized protein.	0.652
MPER_04657	MPER_11391	E2LEB3	E2LVZ2	PNTB domain-containing protein.	AlaDh_PNT_C domain-containing protein.	0.950
MPER_04657	MPER_11392	E2LEB3	E2LVZ3	PNTB domain-containing protein.	Uncharacterized protein.	0.951
MPER_11391	MPER_04468	E2LVZ2	E2LDU5	AlaDh_PNT_C domain-containing protein.	Uncharacterized protein.	0.651
MPER_11391	MPER_04657	E2LVZ2	E2LEB3	AlaDh_PNT_C domain-containing protein.	PNTB domain-containing protein.	0.950
MPER_11391	MPER_11392	E2LVZ2	E2LVZ3	AlaDh_PNT_C domain-containing protein.	Uncharacterized protein.	0.951
MPER_11392	MPER_04468	E2LVZ3	E2LDU5	Uncharacterized protein.	Uncharacterized protein.	0.653
MPER_11392	MPER_04657	E2LVZ3	E2LEB3	Uncharacterized protein.	PNTB domain-containing protein.	0.951
MPER_11392	MPER_11391	E2LVZ3	E2LVZ2	Uncharacterized protein.	AlaDh_PNT_C domain-containing protein.	0.951
MPER_15986	MPER_04468	E2M602	E2LDU5	Uncharacterized protein.	Uncharacterized protein.	0.558