STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF56817.1alpha-L-rhamnosidase. (872 aa)    
Predicted Functional Partners:
EKF56284.1
Short chain dehydrogenase.
 
   0.654
EKF54034.1
COG3533 Uncharacterized protein conserved in bacteria.
 
    0.605
EKF54046.1
Glycoside hydrolase; COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
  
  0.515
EKF55338.1
Hypothetical protein.
  
 
  0.506
EKF55757.1
COG3669 Alpha-L-fucosidase.
  
     0.505
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.505
EKF55379.1
RNA polymerase Rpb6.
    
   0.502
EKF55979.1
Sulfatase-modifying factor.
  
 
   0.486
EKF54371.1
Glycosyl Hydrolase.
  
  
  0.484
EKF55698.1
Glycoside hydrolase; COG0277 FAD/FMN-containing dehydrogenases.
  
 
  0.479
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.