STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF55429.1COG3239 Fatty acid desaturase. (368 aa)    
Predicted Functional Partners:
EKF56749.1
Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
 0.888
EKF55430.1
COG0436 Aspartate/tyrosine/aromatic aminotransferase.
       0.785
EKF55872.1
Hypothetical protein.
  
     0.634
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
  
 
 0.624
gidB
16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.584
EKF53896.1
Fatty acid hydroxylase.
  
 
 0.567
EKF56337.1
Fatty acid hydroxylase; COG3000 Sterol desaturase.
  
 
 0.556
EKF56112.1
Patatin; COG4667 Predicted esterase of the alpha-beta hydrolase superfamily.
  
     0.501
EKF53892.1
COG1233 Phytoene dehydrogenase and related proteins.
    
 0.498
EKF55016.1
COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA.
  
     0.492
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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