STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKF53856.1Conjugal transfer protein TraA; COG1192 ATPases involved in chromosome partitioning. (196 aa)    
Predicted Functional Partners:
EKF53853.1
Hypothetical protein.
       0.773
EKF53854.1
Hypothetical protein.
       0.773
EKF53855.1
Relaxase/mobilization nuclease family protein; COG0504 CTP synthase (UTP-ammonia lyase).
       0.773
EKF53852.1
transposoN-related/mobilization protein; COG0358 DNA primase (bacterial type).
 
    0.668
EKF55503.1
Partitioning protein; COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
  
   0.653
EKF53857.1
Ribbon-helix-helix fold protein.
       0.631
EKF55773.1
parB-like partition protein; COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
  
   0.629
EKF53858.1
Hypothetical protein.
       0.614
EKF56227.1
DNA methylase; COG1475 Predicted transcriptional regulators; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.561
EKF54064.1
Tn4399-type Integrase; COG4974 Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.554
Your Current Organism:
Galbibacter marinus
NCBI taxonomy Id: 555500
Other names: CCTCC AB 209062, G. marinus, Galbibacter marinus Li et al. 2013, Galbibacter sp. ck-I2-15, LMG 25228, LMG:25228, MCCC 1A03044, strain ck-I2-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.