STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csoS1CMicrocompartments protein; Involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered. (98 aa)    
Predicted Functional Partners:
ACX95761.1
TIGRFAM: carboxysome peptide A; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: tbd:Tbd_2648 carboxysome protein A.
 
 
 
 0.916
ACX95760.1
TIGRFAM: carboxysome peptide B; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: afr:AFE_1686 carboxysome peptide B.
 
 
 
 0.914
csoS1A
Microcompartments protein; Involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.
 
   
0.897
csoS1B
Microcompartments protein; Involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.
 
   
0.843
ACX95763.1
KEGG: tgr:Tgr7_3201 carboxysome shell protein CsoS2.
 
   
 0.788
ACX95746.1
PFAM: microcompartments protein; KEGG: nwi:Nwi_1974 hypothetical protein.
 
 
   0.785
ACX95762.1
TIGRFAM: carboxysome shell carbonic anhydrase; PFAM: Carboxysome shell carbonic anhydrase; KEGG: afe:Lferr_1386 carboxysome shell carbonic anhydrase.
 
   
 0.708
cbbS
Ribulose-bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO small chain family.
   
 
 0.670
cbbL
Ribulose-bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.
     
 0.497
Your Current Organism:
Halothiobacillus neapolitanus
NCBI taxonomy Id: 555778
Other names: H. neapolitanus c2, Halothiobacillus neapolitanus ATCC 23641, Halothiobacillus neapolitanus c2, Halothiobacillus neapolitanus str. c2, Halothiobacillus neapolitanus strain c2
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