STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHATR_46908Predicted protein. (708 aa)    
Predicted Functional Partners:
B7FPJ8_PHATC
Predicted protein.
   
 
 0.765
B7G362_PHATC
Predicted protein.
   
   0.741
B7FY86_PHATC
Predicted protein.
   
 
 0.706
PHATR_37018
Predicted protein.
   
 
 0.682
rpl2
50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.
   
   0.676
rpl6
50S ribosomal protein L6, chloroplastic; Binds 23S rRNA.
   
   0.658
B7FZL2_PHATC
Predicted protein.
   
   0.649
B7FWF8_PHATC
Predicted protein.
   
 
 0.635
B7FZ13_PHATC
Predicted protein.
    
   0.633
rpl3
50S ribosomal protein L3, chloroplastic; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
   0.596
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.