STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7FS64_PHATCPredicted protein. (343 aa)    
Predicted Functional Partners:
B7FUI2_PHATC
Predicted protein.
    
 0.955
B7FSR1_PHATC
Predicted protein.
   
 0.835
B7FPF6_PHATC
Predicted protein.
   
 0.815
B7G376_PHATC
Transcription elongation factor SPT5.
   
 0.800
B7G1T7_PHATC
Predicted protein.
   
 0.788
B7FSY7_PHATC
Predicted protein.
   
  0.765
B7G787_PHATC
Predicted protein.
   
 0.733
B7FXW7_PHATC
Predicted protein.
    
 0.715
B7G229_PHATC
Predicted protein.
    
 0.702
B7G7Y8_PHATC
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 0.689
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.