STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7FST1_PHATCPredicted protein. (278 aa)    
Predicted Functional Partners:
rps12
30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity).
  
 0.968
rps2
30S ribosomal protein S2, chloroplastic.
  
 0.967
PHATR_18559
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.966
B7FQG6_PHATC
Predicted protein.
   
 
 0.966
B7FW69_PHATC
Predicted protein.
   
 
 0.966
B7G0T6_PHATC
Predicted protein.
   
 
 0.966
B7FPS3_PHATC
Predicted protein; Belongs to the universal ribosomal protein uS5 family.
   
 0.965
B7FPM3_PHATC
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 0.964
B7FTI0_PHATC
Predicted protein.
   
 0.964
rps19-2
Predicted protein; Belongs to the universal ribosomal protein uS19 family.
   
 0.964
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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