STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7G8A4_PHATCPredicted protein. (436 aa)    
Predicted Functional Partners:
PHATR_44108
Predicted protein.
   
 0.999
MAT1
Predicted protein.
   
 0.999
ERCC2
Xeroderma pigmentosum group D complementing protein.
    
 0.998
PHATR_43960
Predicted protein.
    
 0.996
B7G0F2_PHATC
Predicted protein.
    
 0.994
TFIIH-p44
General transcription factor IIH subunit.
   
 0.992
CDKD1
Predicted protein; Belongs to the protein kinase superfamily.
    
 0.935
B7FYJ9_PHATC
Predicted protein; Belongs to the protein kinase superfamily.
    
 0.935
B7G3Z0_PHATC
Predicted protein.
    
 0.935
B7FQG9_PHATC
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
  0.918
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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