STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7G9K8_PHATCPredicted protein. (472 aa)    
Predicted Functional Partners:
B7FZ68_PHATC
Predicted protein.
     
 0.774
UBI3
Ubiquitin extension protein 3.
   
  0.767
UBI1/2
Ubiquitin extension protein 1/2.
    
 0.744
B7FYQ7_PHATC
Predicted protein.
    
 0.679
UBA3
Ubiquitin-activating enzyme E1, protein 3.
    
 0.648
B7G8G3_PHATC
Predicted protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.637
B7FPC7_PHATC
Predicted protein.
     
 0.625
B7GBX5_PHATC
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
     
 0.595
B7FWL0_PHATC
Predicted protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.563
B7G3H7_PHATC
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
 0.558
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.