STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl20-250S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (98 aa)    
Predicted Functional Partners:
rps2
30S ribosomal protein S2, chloroplastic.
  
 
 0.984
rpl2
50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.
   
 
 0.984
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
   
 
 0.981
B7FWF8_PHATC
Predicted protein.
  
 
 0.980
B7G1A9_PHATC
Predicted protein.
  
 
 0.980
B7FPQ0_PHATC
Predicted protein.
   
 
 0.978
B7FTI0_PHATC
Predicted protein.
   
 
 0.978
rps19-2
Predicted protein; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.978
rpl36
50S ribosomal protein L36, chloroplastic.
   
 
 0.977
rpl31
50S ribosomal protein L31, chloroplastic; Binds the 23S rRNA.
  
 
 0.977
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.