STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N303_09367Putative tRNA (Uracil-O(2)-)-methyltransferase. (535 aa)    
Predicted Functional Partners:
N303_01271
tRNA (Adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6.
   
  
 0.638
N303_15471
tRNA (Adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A.
   
  
 0.616
N303_13324
tRNA:m(4)X modification enzyme TRM13.
   
  
 0.598
N303_02164
PseudoU_synth_1 domain-containing protein.
   
  
 0.575
N303_05170
Putative tRNA pseudouridine synthase 1.
   
  
 0.573
N303_14965
tRNA (Guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4.
   
  
 0.552
N303_14510
WD repeat-containing protein 6.
   
  
 0.547
N303_07940
Methyltransferase-like 13.
   
  
 0.499
N303_07211
Methyltransferase-like 5.
      
 0.483
N303_11675
Methyltransferase-like 10.
   
  
 0.478
Your Current Organism:
Cuculus canorus
NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo
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