STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N303_11359Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (330 aa)    
Predicted Functional Partners:
N303_10542
Protein prenyltransferase alpha subunit repeat-containing protein 1.
    
 0.999
N303_06650
Rab proteins geranylgeranyltransferase component A 2.
    
 0.964
N303_01249
Ras-related protein Rab-1A.
    
 0.934
N303_00993
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.886
N303_12487
Synaptobrevin YKT6-B; Belongs to the synaptobrevin family.
    
 
 0.885
N303_06494
Ras-related protein Rab-33A.
    
 0.801
N303_00466
Ras-related protein Rab-43.
    
 0.796
N303_05565
Ras-related protein Rab-19.
    
 0.796
N303_11255
Rab-like 6.
    
 0.786
N303_08853
Cingulin-like 1.
    
 0.786
Your Current Organism:
Cuculus canorus
NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo
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