N303_08118 protein (Cuculus canorus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N303_08118

RNA polymerase II-associated protein 1. (1421 aa)

Predicted Functional Partners:

N303_00261

0.865

N303_10501

0.745

N303_10347

0.704

N303_13569

0.568

N303_09073

0.551

N303_11605

0.531

N303_13139

0.531

N303_12094

0.513

N303_00201

0.486

N303_00918

0.475

Your Current Organism:

Cuculus canorus

NCBI taxonomy Id: 55661
Other names: C. canorus, common cuckoo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N303_00201	N303_00261	A0A091FRW0	A0A091FT37	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.795
N303_00201	N303_00918	A0A091FRW0	A0A091FMN1	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
N303_00201	N303_08118	A0A091FRW0	A0A091H9F5	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	RNA polymerase II-associated protein 1.	0.486
N303_00201	N303_09073	A0A091FRW0	A0A091GMC8	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.999
N303_00201	N303_10347	A0A091FRW0	A0A091FP32	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerase II subunit RPB3.	0.999
N303_00201	N303_10501	A0A091FRW0	A0A091GLY2	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	0.459
N303_00201	N303_11605	A0A091FRW0	A0A091G5U8	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2.	0.973
N303_00201	N303_12094	A0A091FRW0	A0A091FZJ4	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerase II subunit RPB11-a.	0.999
N303_00201	N303_13139	A0A091FRW0	A0A091H4R3	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	RNA polymerase II-associated protein 3.	0.646
N303_00201	N303_13569	A0A091FRW0	A0A091GC82	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.800
N303_00261	N303_00201	A0A091FT37	A0A091FRW0	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.795
N303_00261	N303_00918	A0A091FT37	A0A091FMN1	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.867
N303_00261	N303_08118	A0A091FT37	A0A091H9F5	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	RNA polymerase II-associated protein 1.	0.865
N303_00261	N303_09073	A0A091FT37	A0A091GMC8	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.423
N303_00261	N303_10347	A0A091FT37	A0A091FP32	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	DNA-directed RNA polymerase II subunit RPB3.	0.835
N303_00261	N303_10501	A0A091FT37	A0A091GLY2	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	0.970
N303_00261	N303_11605	A0A091FT37	A0A091G5U8	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2.	0.556
N303_00261	N303_12094	A0A091FT37	A0A091FZJ4	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	DNA-directed RNA polymerase II subunit RPB11-a.	0.828
N303_00261	N303_13569	A0A091FT37	A0A091GC82	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.706
N303_00918	N303_00201	A0A091FMN1	A0A091FRW0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.999