STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lreu_0413Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR. (151 aa)    
Predicted Functional Partners:
Lreu_0414
TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3.
  
    0.779
Lreu_0412
peptidoglycan-N-acetylmuramate O-acetyltransferase; PFAM: acyltransferase 3.
       0.757
Lreu_0225
PFAM: biotin/lipoate A/B protein ligase.
 
     0.688
Lreu_0393
Esterase/lipase-like protein.
  
     0.677
Lreu_0411
Hypothetical protein.
       0.576
Lreu_0278
PFAM: metallophosphoesterase.
 
     0.469
Lreu_0629
Hypothetical protein.
  
     0.463
Lreu_1635
Hypothetical protein.
  
     0.451
Lreu_0626
Hypothetical protein.
  
     0.447
Lreu_1875
Hypothetical protein.
 
  
 0.438
Your Current Organism:
Lactobacillus reuteri
NCBI taxonomy Id: 557436
Other names: L. reuteri DSM 20016, Lactobacillus reuteri DSM 20016, Lactobacillus reuteri str. DSM 20016, Lactobacillus reuteri strain DSM 20016
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.