STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lreu_0665TIGRFAM: phage/plasmid primase, P4 family. (463 aa)    
Predicted Functional Partners:
Lreu_0664
Hypothetical protein.
       0.689
Lreu_0663
Hypothetical protein.
       0.645
Lreu_1115
PFAM: peptidase S14, ClpP; Belongs to the peptidase S14 family.
 
     0.521
Lreu_0831
SMART: ParB domain protein nuclease.
 
    0.471
Lreu_0796
Recombinase; PFAM: Resolvase, N-terminal domain; Recombinase.
 
  
 0.451
Lreu_0662
Hypothetical protein.
       0.429
Lreu_0661
PFAM: phosphoesterase, RecJ domain protein.
       0.414
Your Current Organism:
Lactobacillus reuteri
NCBI taxonomy Id: 557436
Other names: L. reuteri DSM 20016, Lactobacillus reuteri DSM 20016, Lactobacillus reuteri str. DSM 20016, Lactobacillus reuteri strain DSM 20016
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.