STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lreu_1147Hypothetical protein. (105 aa)    
Predicted Functional Partners:
Lreu_1148
PFAM: phage integrase family protein; Belongs to the 'phage' integrase family.
       0.773
Lreu_1320
Uncharacterized protein.
  
     0.535
Lreu_1754
PFAM: Xylose isomerase domain protein TIM barrel.
  
     0.512
Lreu_1144
PFAM: helix-turn-helix domain protein.
 
     0.484
Lreu_1146
PFAM: protein of unknown function DUF1535.
       0.466
Lreu_1587
PFAM: peptidase M10A and M12B, matrixin and adamalysin.
  
     0.464
Lreu_0320
Hypothetical protein.
  
     0.435
Lreu_1107
TIGRFAM: phage tape measure protein; PFAM: Lytic transglycosylase, catalytic.
  
     0.424
Lreu_1109
PFAM: phage major tail protein.
  
     0.423
Lreu_1111
TIGRFAM: phage protein, HK97 gp10 family; PFAM: protein of unknown function DUF646, phage head/tail component.
  
     0.413
Your Current Organism:
Lactobacillus reuteri
NCBI taxonomy Id: 557436
Other names: L. reuteri DSM 20016, Lactobacillus reuteri DSM 20016, Lactobacillus reuteri str. DSM 20016, Lactobacillus reuteri strain DSM 20016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.