STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHK_01855DUF484 domain containing protein. (214 aa)    
Predicted Functional Partners:
dapF
DapF; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
  
    0.931
LHK_01854
Hypothetical protein.
       0.773
LHK_02143
Probable transmembrane protein.
  
     0.694
LHK_00602
Probable transmembrane protein.
  
    0.688
LHK_00687
Putative membrane protein.
  
    0.685
holA
HolA; DNA-directed DNA polymerase, delta subunit.
  
     0.656
LHK_00035
Hypothetical protein.
  
     0.637
LHK_02938
Sporulation related.
  
     0.626
LHK_00879
Generic methyl-transferase.
  
     0.623
hemY
HemY; Protein porphyrin biosynthesis.
 
     0.591
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
Server load: low (24%) [HD]