Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| infC | rplK | LHK_02756 | LHK_00242 | InfC; Translation initiation factor IF-3; Belongs to the IF-3 family. | RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.946 |
| infC | rplM | LHK_02756 | LHK_02778 | InfC; Translation initiation factor IF-3; Belongs to the IF-3 family. | RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.965 |
| infC | rplS | LHK_02756 | LHK_00363 | InfC; Translation initiation factor IF-3; Belongs to the IF-3 family. | RplS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.896 |
| infC | rplT | LHK_02756 | LHK_02754 | InfC; Translation initiation factor IF-3; Belongs to the IF-3 family. | RplT; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.997 |
| infC | rplU | LHK_02756 | LHK_02967 | InfC; Translation initiation factor IF-3; Belongs to the IF-3 family. | RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.935 |
| infC | rplV | LHK_02756 | LHK_00258 | InfC; Translation initiation factor IF-3; Belongs to the IF-3 family. | RplV; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.917 |
| infC | rpmA | LHK_02756 | LHK_02968 | InfC; Translation initiation factor IF-3; Belongs to the IF-3 family. | RpmA; 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.869 |
| infC | rpmI | LHK_02756 | LHK_02755 | InfC; Translation initiation factor IF-3; Belongs to the IF-3 family. | RpmI; 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.979 |
| infC | rpsD | LHK_02756 | LHK_00278 | InfC; Translation initiation factor IF-3; Belongs to the IF-3 family. | RpsD; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.974 |
| infC | rpsO | LHK_02756 | LHK_01925 | InfC; Translation initiation factor IF-3; Belongs to the IF-3 family. | RpsO; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.926 |
| rplK | infC | LHK_00242 | LHK_02756 | RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | InfC; Translation initiation factor IF-3; Belongs to the IF-3 family. | 0.946 |
| rplK | rplM | LHK_00242 | LHK_02778 | RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.997 |
| rplK | rplS | LHK_00242 | LHK_00363 | RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | RplS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.996 |
| rplK | rplT | LHK_00242 | LHK_02754 | RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | RplT; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.996 |
| rplK | rplU | LHK_00242 | LHK_02967 | RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.996 |
| rplK | rplV | LHK_00242 | LHK_00258 | RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | RplV; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.998 |
| rplK | rpmA | LHK_00242 | LHK_02968 | RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | RpmA; 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.996 |
| rplK | rpmI | LHK_00242 | LHK_02755 | RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | RpmI; 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.996 |
| rplK | rpsD | LHK_00242 | LHK_00278 | RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | RpsD; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.997 |
| rplK | rpsO | LHK_00242 | LHK_01925 | RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | RpsO; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.996 |
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