STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrBEmrB; Multidrug resistance protein B; Belongs to the major facilitator superfamily. (512 aa)    
Predicted Functional Partners:
LHK_03133
Efflux pump membrane protein.
 
 0.983
LHK_01374
Secretion protein HlyD family protein.
 
 0.934
tolC4
TolC4; Probable outer membrane multidrug resistance lipoprotein.
 
  
 0.801
LHK_03135
Metal dependent phosphohydrolase.
       0.668
emrR
EmrR; Transcriptional repressor emr operon, MarR family.
 
   
 0.647
LHK_02975
Probable MFS transporter.
  
   
 0.641
LHK_00743
Probable multidrug translocase protein.
  
   
 0.617
LHK_02173
Probable MFS transporter.
  
   
 0.537
tolR
TolR protein.
    
 
 0.500
hem3
Hem3; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
       0.493
Your Current Organism:
Laribacter hongkongensis
NCBI taxonomy Id: 557598
Other names: L. hongkongensis HLHK9, Laribacter hongkongensis HLHK9, Laribacter hongkongensis str. HLHK9, Laribacter hongkongensis strain HLHK9
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