Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HAPS_0171 | sixA | HAPS_0171 | HAPS_2183 | Conserved hypothetical protein; COG:S;COG3100. | Phosphohistidine phosphatase; COG:T;COG2062. | 0.495 |
HAPS_0171 | trmA2 | HAPS_0171 | HAPS_1963 | Conserved hypothetical protein; COG:S;COG3100. | tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA). | 0.457 |
HAPS_1962 | sixA | HAPS_1962 | HAPS_2183 | Conserved hypothetical protein; COG:S;COG3085. | Phosphohistidine phosphatase; COG:T;COG2062. | 0.437 |
HAPS_1962 | trmA2 | HAPS_1962 | HAPS_1963 | Conserved hypothetical protein; COG:S;COG3085. | tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA). | 0.660 |
luxS | trmA2 | HAPS_0063 | HAPS_1963 | S-ribosylhomocysteinase/S-ribosylhomocysteinase lyase involved in autoinducer AI2 synthesis; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA). | 0.517 |
rlmL | trmA2 | HAPS_2029 | HAPS_1963 | 23S rRNA m(2)G2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA). | 0.408 |
sixA | HAPS_0171 | HAPS_2183 | HAPS_0171 | Phosphohistidine phosphatase; COG:T;COG2062. | Conserved hypothetical protein; COG:S;COG3100. | 0.495 |
sixA | HAPS_1962 | HAPS_2183 | HAPS_1962 | Phosphohistidine phosphatase; COG:T;COG2062. | Conserved hypothetical protein; COG:S;COG3085. | 0.437 |
sixA | trmA2 | HAPS_2183 | HAPS_1963 | Phosphohistidine phosphatase; COG:T;COG2062. | tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA). | 0.404 |
trmA2 | HAPS_0171 | HAPS_1963 | HAPS_0171 | tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA). | Conserved hypothetical protein; COG:S;COG3100. | 0.457 |
trmA2 | HAPS_1962 | HAPS_1963 | HAPS_1962 | tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA). | Conserved hypothetical protein; COG:S;COG3085. | 0.660 |
trmA2 | luxS | HAPS_1963 | HAPS_0063 | tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA). | S-ribosylhomocysteinase/S-ribosylhomocysteinase lyase involved in autoinducer AI2 synthesis; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.517 |
trmA2 | rlmL | HAPS_1963 | HAPS_2029 | tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA). | 23S rRNA m(2)G2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.408 |
trmA2 | sixA | HAPS_1963 | HAPS_2183 | tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA). | Phosphohistidine phosphatase; COG:T;COG2062. | 0.404 |