STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDCG_01194Uncharacterized protein. (304 aa)    
Predicted Functional Partners:
BDCG_06586
Pre-mRNA splicing factor.
    
 
 0.610
BDCG_02281
Ribonuclease P/MRP protein subunit POP1.
    
 
 0.528
BDCG_01011
U4/U6 small nuclear ribonucleoprotein.
    
 
 0.525
BDCG_16597
Uncharacterized protein.
    
 
 0.519
BDCG_06922
Pre-mRNA polyadenylation factor fip1.
    
 
 0.509
BDCG_05499
Pre-mRNA splicing factor.
    
 
 0.488
BDCG_06029
Von Willebrand domain-containing protein.
    
   0.485
BDCG_07036
Carbonic anhydrase, variant.
    
   0.485
LSM5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
    
   0.473
BDCG_01768
GTP-binding protein EsdC.
    
   0.465
Your Current Organism:
Blastomyces dermatitidis
NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.