STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDCG_02472Uncharacterized protein. (152 aa)    
Predicted Functional Partners:
BDCG_03116
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
   
 0.783
BDCG_01765
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.781
BDCG_00983
DNA-directed RNA polymerase I, II, and III subunit RPABC1.
    
 0.772
BDCG_01461
DNA-directed RNA polymerase I, II, and III subunit RPABC2.
    
 0.772
BDCG_06521
DNA-directed RNA polymerase I, II, and III subunit RPABC5.
    
 0.772
BDCG_07640
DNA-directed RNA polymerase II subunit RPB3.
    
 0.772
BDCG_08598
DNA-directed RNA polymerase II subunit RPB4.
    
 0.772
BDCG_08877
DNA-directed RNA polymerase I, II, and III subunit RPABC4.
    
 0.772
BDCG_00153
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.771
BDCG_01341
DNA-directed RNA polymerase II subunit RPB11.
    
 0.771
Your Current Organism:
Blastomyces dermatitidis
NCBI taxonomy Id: 559297
Other names: Ajellomyces dermatitidis ER-3, B. dermatitidis ER-3, Blastomyces dermatitidis ER-3
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