TERG_00163 protein (Trichophyton rubrum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TERG_00163

MFS domain-containing protein. (575 aa)

Predicted Functional Partners:

TERG_08711

0.446

TERG_11606

0.444

TERG_11607

0.444

TERG_05008

0.444

TERG_06010

0.444

TERG_05667

0.437

TERG_07735

0.422

TERG_00390

0.415

TERG_00891

0.414

TERG_01688

0.413

Your Current Organism:

Trichophyton rubrum

NCBI taxonomy Id: 559305
Other names: T. rubrum CBS 118892, Trichophyton rubrum CBS 118892

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TERG_00163	TERG_00390	F2SE85	F2SFH6	MFS domain-containing protein.	AP-1 complex subunit gamma.	0.415
TERG_00163	TERG_00891	F2SE85	F2SDT6	MFS domain-containing protein.	Ribosomal protein S2.	0.414
TERG_00163	TERG_01688	F2SE85	F2SHF7	MFS domain-containing protein.	Adaptin_N domain-containing protein.	0.413
TERG_00163	TERG_05008	F2SE85	F2SQZ3	MFS domain-containing protein.	Rad60-SLD_2 domain-containing protein.	0.444
TERG_00163	TERG_05667	F2SE85	F2ST65	MFS domain-containing protein.	Alpha_adaptinC2 domain-containing protein.	0.437
TERG_00163	TERG_06010	F2SE85	F2SU60	MFS domain-containing protein.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.444
TERG_00163	TERG_07735	F2SE85	F2SYS9	MFS domain-containing protein.	Ribosomal protein L19.	0.422
TERG_00163	TERG_08711	F2SE85	F2SIX7	MFS domain-containing protein.	Uncharacterized protein.	0.446
TERG_00163	TERG_11606	F2SE85	A0A080WI95	MFS domain-containing protein.	Adaptin_N domain-containing protein.	0.444
TERG_00163	TERG_11607	F2SE85	A0A080WQ44	MFS domain-containing protein.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.444
TERG_00390	TERG_00163	F2SFH6	F2SE85	AP-1 complex subunit gamma.	MFS domain-containing protein.	0.415
TERG_00390	TERG_01688	F2SFH6	F2SHF7	AP-1 complex subunit gamma.	Adaptin_N domain-containing protein.	0.533
TERG_00390	TERG_05008	F2SFH6	F2SQZ3	AP-1 complex subunit gamma.	Rad60-SLD_2 domain-containing protein.	0.939
TERG_00390	TERG_05667	F2SFH6	F2ST65	AP-1 complex subunit gamma.	Alpha_adaptinC2 domain-containing protein.	0.544
TERG_00390	TERG_06010	F2SFH6	F2SU60	AP-1 complex subunit gamma.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.939
TERG_00390	TERG_08711	F2SFH6	F2SIX7	AP-1 complex subunit gamma.	Uncharacterized protein.	0.418
TERG_00390	TERG_11606	F2SFH6	A0A080WI95	AP-1 complex subunit gamma.	Adaptin_N domain-containing protein.	0.939
TERG_00390	TERG_11607	F2SFH6	A0A080WQ44	AP-1 complex subunit gamma.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.939
TERG_00891	TERG_00163	F2SDT6	F2SE85	Ribosomal protein S2.	MFS domain-containing protein.	0.414
TERG_00891	TERG_07735	F2SDT6	F2SYS9	Ribosomal protein S2.	Ribosomal protein L19.	0.998