STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AA0117_g6524DNA damage-binding protein 1a. (1116 aa)    
Predicted Functional Partners:
A0A177DU56
Cullin-domain-containing protein; Belongs to the cullin family.
  
 0.999
AA0117_g7719
WD40 repeat-like protein.
    
 0.998
A0A177DRI2
Putative hyperosmotic protein 21.
    
 0.998
A0A177DV36
Lethal(2)denticleless protein.
    
 0.998
A0A177D6R7
DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.
    
 0.980
A0A177E4I1
WD and tetratricopeptide repeat-containing protein.
    
 0.976
AA0117_g2411
WD40 repeat-like protein.
    
 0.957
A0A177DBK6
DNA repair and recombination protein RAD26.
    
 0.954
A0A177DYR1
ARM repeat-containing protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.953
A0A177D3Z7
Uncharacterized protein.
    
 0.951
Your Current Organism:
Alternaria alternata
NCBI taxonomy Id: 5599
Other names: A. alternata, ATCC 66981 [[Alternaria tenuis]], Alternaria sp. AltIEIHBT, Alternaria sp. Ao34, Alternaria sp. Ao41, Alternaria sp. JZ017, Alternaria sp. M2-2, Alternaria sp. XJU-1, Alternaria tenuis, CBS 916.96 [[Alternaria tenuis]], EGS 34-016 [[Alternaria tenuis]], IMI 254138 [[Alternaria tenuis]], Torula alternata
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