STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AA0117_g5825Uncharacterized protein. (214 aa)    
Predicted Functional Partners:
AA0117_g3230
Ribosomal protein 60S; Belongs to the eukaryotic ribosomal protein P1/P2 family.
   
 0.945
AA0117_g8318
L30e-like protein.
   
 0.942
A0A177DS57
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
  
 0.942
AA0117_g7267
60S ribosomal protein.
   
 0.941
AA0117_g3073
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 0.940
AA0117_g6787
60S ribosomal protein.
   
 0.933
A0A177DBX0
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
   
 0.933
AA0117_g11844
Uncharacterized protein.
   
 0.933
A0A177DWF0
60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.
  
  0.932
A0A177E1L5
Ribosomal_L14e domain-containing protein.
   
 0.932
Your Current Organism:
Alternaria alternata
NCBI taxonomy Id: 5599
Other names: A. alternata, ATCC 66981 [[Alternaria tenuis]], Alternaria sp. AltIEIHBT, Alternaria sp. Ao34, Alternaria sp. Ao41, Alternaria sp. JZ017, Alternaria sp. M2-2, Alternaria sp. XJU-1, Alternaria tenuis, CBS 916.96 [[Alternaria tenuis]], EGS 34-016 [[Alternaria tenuis]], IMI 254138 [[Alternaria tenuis]], Torula alternata
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