SMF67241.1 protein (Tistlia consotensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMF67241.1

Putative Zn-dependent protease, contains TPR repeats. (455 aa)

Predicted Functional Partners:

SMF79058.1

0.857

ribB

0.833

SMF08207.1

0.801

SMF67235.1

0.777

SME98721.1

0.776

SMF67249.1

0.692

SMF83792.1

0.679

SMF14488.1

0.645

SMF40391.1

0.618

SME99365.1

0.595

Your Current Organism:

Tistlia consotensis

NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SME98721.1	SMF14488.1	SAMN05428998_102201	SAMN05428998_105269	Methyltransferase domain-containing protein.	HAMP domain-containing protein.	0.755
SME98721.1	SMF40391.1	SAMN05428998_102201	SAMN05428998_11415	Methyltransferase domain-containing protein.	PAS domain S-box-containing protein.	0.793
SME98721.1	SMF67241.1	SAMN05428998_102201	SAMN05428998_12724	Methyltransferase domain-containing protein.	Putative Zn-dependent protease, contains TPR repeats.	0.776
SME98721.1	SMF79058.1	SAMN05428998_102201	SAMN05428998_13943	Methyltransferase domain-containing protein.	Two-component sensor histidine kinase, contains HisKA and HATPase domains.	0.932
SME98721.1	SMF83792.1	SAMN05428998_102201	SAMN05428998_15115	Methyltransferase domain-containing protein.	PAS domain S-box-containing protein.	0.744
SME99365.1	SMF14488.1	SAMN05428998_102268	SAMN05428998_105269	Signal transduction histidine kinase.	HAMP domain-containing protein.	0.999
SME99365.1	SMF40391.1	SAMN05428998_102268	SAMN05428998_11415	Signal transduction histidine kinase.	PAS domain S-box-containing protein.	0.999
SME99365.1	SMF67241.1	SAMN05428998_102268	SAMN05428998_12724	Signal transduction histidine kinase.	Putative Zn-dependent protease, contains TPR repeats.	0.595
SME99365.1	SMF79058.1	SAMN05428998_102268	SAMN05428998_13943	Signal transduction histidine kinase.	Two-component sensor histidine kinase, contains HisKA and HATPase domains.	0.999
SME99365.1	SMF83792.1	SAMN05428998_102268	SAMN05428998_15115	Signal transduction histidine kinase.	PAS domain S-box-containing protein.	0.998
SME99365.1	ribB	SAMN05428998_102268	SAMN05428998_10763	Signal transduction histidine kinase.	3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.	0.850
SMF08207.1	SMF40391.1	SAMN05428998_104119	SAMN05428998_11415	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.	PAS domain S-box-containing protein.	0.683
SMF08207.1	SMF67241.1	SAMN05428998_104119	SAMN05428998_12724	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.	Putative Zn-dependent protease, contains TPR repeats.	0.801
SMF08207.1	SMF79058.1	SAMN05428998_104119	SAMN05428998_13943	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.	Two-component sensor histidine kinase, contains HisKA and HATPase domains.	0.863
SMF08207.1	SMF83792.1	SAMN05428998_104119	SAMN05428998_15115	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.	PAS domain S-box-containing protein.	0.694
SMF14488.1	SME98721.1	SAMN05428998_105269	SAMN05428998_102201	HAMP domain-containing protein.	Methyltransferase domain-containing protein.	0.755
SMF14488.1	SME99365.1	SAMN05428998_105269	SAMN05428998_102268	HAMP domain-containing protein.	Signal transduction histidine kinase.	0.999
SMF14488.1	SMF40391.1	SAMN05428998_105269	SAMN05428998_11415	HAMP domain-containing protein.	PAS domain S-box-containing protein.	0.999
SMF14488.1	SMF67241.1	SAMN05428998_105269	SAMN05428998_12724	HAMP domain-containing protein.	Putative Zn-dependent protease, contains TPR repeats.	0.645
SMF14488.1	SMF79058.1	SAMN05428998_105269	SAMN05428998_13943	HAMP domain-containing protein.	Two-component sensor histidine kinase, contains HisKA and HATPase domains.	0.999