STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaBRhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L- mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1-hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate; Belongs to the rhamnulokinase family (496 aa)    
Predicted Functional Partners:
rhaA
KEGG: eca:ECA0439 L-rhamnose isomerase; TIGRFAM: L-rhamnose isomerase; PFAM: L-rhamnose isomerase
 
 
 0.999
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1- phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde; Belongs to the aldolase class II family. RhaD subfamily
 
 
 0.998
rhaM
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose
 
   
 0.920
PC1_3695
PFAM: carbohydrate kinase FGGY; KEGG: spe:Spro_3936 carbohydrate kinase FGGY; Belongs to the FGGY kinase family
  
 
0.911
rhaR
HTH-type transcriptional activator RhaR; Activates expression of the rhaSR operon in response to L-rhamnose
 
  
 0.901
rhaT
L-rhamnose-proton symporter; Uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell (symport system)
 
  
 0.879
rhaS
HTH-type transcriptional activator RhaS; Activates expression of the rhaBAD and rhaT operons
 
    0.797
araB
TIGRFAM: L-ribulokinase; PFAM: carbohydrate kinase FGGY; KEGG: eca:ECA2274 ribulokinase; Belongs to the ribulokinase family
     
 0.482
PC1_0803
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: eca:ECA0918 putative dehydrogenase
 
 
 0.403
Your Current Organism:
Pectobacterium carotovorum PC1
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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