STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaBRhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family. (496 aa)    
Predicted Functional Partners:
rhaA
KEGG: eca:ECA0439 L-rhamnose isomerase; TIGRFAM: L-rhamnose isomerase; PFAM: L-rhamnose isomerase.
 
 
 0.999
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde. Belongs to the aldolase class II family. RhaD subfamily.
 
 
 0.996
rhaM
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
  
 0.980
PC1_3695
PFAM: carbohydrate kinase FGGY; KEGG: spe:Spro_3936 carbohydrate kinase FGGY; Belongs to the FGGY kinase family.
  
  
 
0.909
rhaT
RhaT l-rhamnose-proton symport 2; Uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Belongs to the L-rhamnose transporter (TC 2.A.7.6) family.
 
  
 0.803
rhaS
Transcriptional regulator, AraC family; Activates expression of the rhaBAD and rhaT operons.
 
   
 0.757
rhaR
Transcriptional regulator, AraC family; Activates expression of the rhaSR operon in response to L- rhamnose.
 
   
 0.751
PC1_0621
TIGRFAM: lactaldehyde reductase; PFAM: iron-containing alcohol dehydrogenase; KEGG: eca:ECA0742 L-1,2-propanediol oxidoreductase.
 
   
 0.657
PC1_2962
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: eca:ECA3179 beta-galactosidase.
 
    0.518
PC1_0116
PFAM: class II aldolase/adducin family protein; KEGG: eca:ECA4329 putative aldolase.
 
  
 0.415
Your Current Organism:
Pectobacterium carotovorum
NCBI taxonomy Id: 561230
Other names: P. carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum PC1, Pectobacterium carotovorum subsp. carotovorum str. PC1, Pectobacterium carotovorum subsp. carotovorum strain PC1
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